Scatter3D#
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- Title
- Scatter3D Element
- Dependencies
- Matplotlib
- Backends
- Matplotlib
- Plotly
import numpy as np
import pandas as pd
import holoviews as hv
from holoviews import dim, opts
hv.extension('plotly')
Scatter3D plots represents three-dimensional coordinates which are specified as key dimensions (kdims, default kdims are x, y, z). The points can be given a marker, color and size. Additionally a colorbar can be added.
Scatter3D plots are therefore very similar to Points and Scatter types, but have one additional coordinate dimension.
Like other 3D elements the camera angle can be controlled using azimuth, elevation and distance plot options
y,x = np.mgrid[-5:5, -5:5] * 0.1
z=np.sin(x**2+y**2)
hv.Scatter3D((x.flat,y.flat,z.flat)).opts(cmap='fire', color='z', size=5, colorbar=True, height=600, width=600)
You can also provide your data in a container and specify the kdims to use.
data = pd.DataFrame(dict(lat=x.flat, lon=y.flat, height=z.flat))
hv.Scatter3D(data, kdims=["lat", "lon", "height"]).opts(cmap='blues', color='height', size=3, colorbar=True, height=600, width=600, colorbar_opts={'title': 'height (m)'}, marker="diamond")
Just like all regular 2D elements, Scatter3D types can be overlaid and will follow the default color cycle:
(hv.Scatter3D(np.random.randn(100,4), vdims='Size') * hv.Scatter3D(np.random.randn(100,4)+2, vdims='Size')).opts(
opts.Scatter3D(size=(5+dim('Size'))*2, marker='diamond', height=600, width=600)
)
For full documentation and the available style and plot options, use hv.help(hv.Scatter3D).
hv.help(hv.Scatter3D)
Scatter3D
Online example: http://holoviews.org/reference/elements/plotly/Scatter3D.html
-------------
Style Options
-------------
alpha, cmap, color, marker, opacity, size, sizemin, visible
(Consult plotly's documentation for more information.)
------------
Plot Options
------------
The plot options are the parameters of the plotting class:
Parameters of 'Scatter3DPlot'
=============================
Parameters changed from their default values are marked in red.
Soft bound values are marked in cyan.
C/V= Constant/Variable, RO/RW = ReadOnly/ReadWrite, AN=Allow None
Name Value Type Bounds Mode
fontsize None Parameter V RW AN
fontscale None Number V RW AN
show_title True Boolean V RW
title '{label} {group}\n{dimensions}' String V RW
normalize True Boolean V RW
projection '3d' String V RW
apply_ranges True Boolean V RW
apply_extents True Boolean V RW
bgcolor None ClassSelector V RW AN
default_span 2.0 ClassSelector V RW
hooks [] HookList (0, None) V RW
invert_axes False ObjectSelector V RW
invert_xaxis False Boolean V RW
invert_yaxis False Boolean V RW
logx False Boolean V RW
logy False Boolean V RW
padding 0.1 ClassSelector V RW
show_legend False Boolean V RW
show_grid False Boolean V RW
xaxis 'bottom' ObjectSelector V RW
yaxis 'left' ObjectSelector V RW
xlabel None String V RW AN
ylabel None String V RW AN
xlim (nan, nan) Tuple V RW
ylim (nan, nan) Tuple V RW
zlim (nan, nan) Tuple V RW
xrotation None Integer (0, 360) V RW AN
yrotation None Integer (0, 360) V RW AN
xticks None Parameter V RW AN
yticks None Parameter V RW AN
width 500 Integer V RW
height 500 Integer V RW
aspect 'cube' Parameter V RW
invert_zaxis False Boolean V RW
labelled ['x', 'y', 'z'] List (0, None) V RW
logz False Boolean V RW
margins (50, 50, 50, 50) NumericTuple V RW
responsive False Boolean V RW
zlabel None String V RW AN
zticks None Parameter V RW AN
clim (nan, nan) NumericTuple V RW
clim_percentile False ClassSelector V RW
colorbar False Boolean V RW
color_levels None ClassSelector V RW AN
colorbar_opts {} Dict V RW
symmetric False Boolean V RW
color_index None ClassSelector V RW AN
camera_angle (0.2, 0.5, 0.1, 0.2) NumericTuple V RW
camera_position (0.1, 0, -0.1) NumericTuple V RW
camera_zoom 3 Integer V RW
Parameter docstrings:
=====================
fontsize: Specifies various font sizes of the displayed text.
Finer control is available by supplying a dictionary where any
unmentioned keys revert to the default sizes, e.g:
{'ticks':20, 'title':15,
'ylabel':5, 'xlabel':5, 'zlabel':5,
'legend':8, 'legend_title':13}
You can set the font size of 'zlabel', 'ylabel' and 'xlabel'
together using the 'labels' key.
fontscale: Scales the size of all fonts.
show_title: Whether to display the plot title.
title: The formatting string for the title of this plot, allows defining
a label group separator and dimension labels.
normalize: Whether to compute ranges across all Elements at this level
of plotting. Allows selecting normalization at different levels
for nested data containers.
projection: Allows supplying a custom projection to transform the axis
coordinates during display. Example projections include '3d'
and 'polar' projections supported by some backends. Depending
on the backend custom, projection objects may be supplied.
apply_ranges: Whether to compute the plot bounds from the data itself.
apply_extents: Whether to apply extent overrides on the Elements
bgcolor: If set bgcolor overrides the background color of the axis.
default_span: Defines the span of an axis if the axis range is zero, i.e. if
the lower and upper end of an axis are equal or no range is
defined at all. For example if there is a single datapoint at
0 a default_span of 2.0 will result in axis ranges spanning
from -1 to 1.
hooks: Optional list of hooks called when finalizing a plot. The
hook is passed the plot object and the displayed element, and
other plotting handles can be accessed via plot.handles.
invert_axes: Inverts the axes of the plot. Note that this parameter may not
always be respected by all plots but should be respected by
adjoined plots when appropriate.
invert_xaxis: Whether to invert the plot x-axis.
invert_yaxis: Whether to invert the plot y-axis.
logx: Whether to apply log scaling to the x-axis of the Chart.
logy: Whether to apply log scaling to the y-axis of the Chart.
padding: Fraction by which to increase auto-ranged extents to make
datapoints more visible around borders.
To compute padding, the axis whose screen size is largest is
chosen, and the range of that axis is increased by the
specified fraction along each axis. Other axes are then
padded ensuring that the amount of screen space devoted to
padding is equal for all axes. If specified as a tuple, the
int or float values in the tuple will be used for padding in
each axis, in order (x,y or x,y,z).
For example, for padding=0.2 on a 800x800-pixel plot, an x-axis
with the range [0,10] will be padded by 20% to be [-1,11], while
a y-axis with a range [0,1000] will be padded to be [-100,1100],
which should make the padding be approximately the same number of
pixels. But if the same plot is changed to have a height of only
200, the y-range will then be [-400,1400] so that the y-axis
padding will still match that of the x-axis.
It is also possible to declare non-equal padding value for the
lower and upper bound of an axis by supplying nested tuples,
e.g. padding=(0.1, (0, 0.1)) will pad the x-axis lower and
upper bound as well as the y-axis upper bound by a fraction of
0.1 while the y-axis lower bound is not padded at all.
show_legend: Whether to show legend for the plot.
show_grid: Whether to show a Cartesian grid on the plot.
xaxis: Whether and where to display the xaxis, bare options allow suppressing
all axis labels including ticks and xlabel. Valid options are 'top',
'bottom', 'bare', 'top-bare' and 'bottom-bare'.
yaxis: Whether and where to display the yaxis, bare options allow suppressing
all axis labels including ticks and ylabel. Valid options are 'left',
'right', 'bare' 'left-bare' and 'right-bare'.
xlabel: An explicit override of the x-axis label, if set takes precedence
over the dimension label.
ylabel: An explicit override of the y-axis label, if set takes precedence
over the dimension label.
xlim: User-specified x-axis range limits for the plot, as a tuple (low,high).
If specified, takes precedence over data and dimension ranges.
ylim: User-specified x-axis range limits for the plot, as a tuple (low,high).
If specified, takes precedence over data and dimension ranges.
zlim: User-specified z-axis range limits for the plot, as a tuple (low,high).
If specified, takes precedence over data and dimension ranges.
xrotation: Rotation angle of the xticks.
yrotation: Rotation angle of the yticks.
xticks: Ticks along x-axis specified as an integer, explicit list of
tick locations, list of tuples containing the locations.
yticks: Ticks along y-axis specified as an integer, explicit list of
tick locations, list of tuples containing the locations.
width: < No docstring available >
height: < No docstring available >
aspect: The aspect ratio mode of the plot. By default, a plot may
select its own appropriate aspect ratio but sometimes it may
be necessary to force a square aspect ratio (e.g. to display
the plot as an element of a grid). The modes 'auto' and
'equal' correspond to the axis modes of the same name in
matplotlib, a numeric value may also be passed.
invert_zaxis: Whether to invert the plot z-axis.
labelled: Whether to label the 'x' and 'y' axes.
logz: Whether to apply log scaling to the y-axis of the Chart.
margins: Margins in pixel values specified as a tuple of the form
(left, bottom, right, top).
responsive: Whether the plot should stretch to fill the available space.
zlabel: An explicit override of the z-axis label, if set takes precedence
over the dimension label.
zticks: Ticks along z-axis specified as an integer, explicit list of
tick locations, list of tuples containing the locations.
clim: User-specified colorbar axis range limits for the plot, as a
tuple (low,high). If specified, takes precedence over data
and dimension ranges.
clim_percentile: Percentile value to compute colorscale robust to outliers. If
True, uses 2nd and 98th percentile; otherwise uses the specified
numerical percentile value.
colorbar: Whether to display a colorbar.
color_levels: Number of discrete colors to use when colormapping or a set of color
intervals defining the range of values to map each color to.
colorbar_opts: Allows setting including borderwidth, showexponent, nticks,
outlinecolor, thickness, bgcolor, outlinewidth, bordercolor,
ticklen, xpad, ypad, tickangle...
symmetric: Whether to make the colormap symmetric around zero.
color_index: Index of the dimension from which the color will the drawn
camera_angle: < No docstring available >
camera_position: < No docstring available >
camera_zoom: < No docstring available >
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