Source code for holoviews.ipython.archive

Implements NotebookArchive used to automatically capture notebook data
and export it to disk via the display hooks.

import time, sys, os, traceback

from IPython import version_info
from IPython.display import Javascript, display
from .preprocessors import Substitute

# Import appropriate nbconvert machinery
if version_info[0] >= 4:
    # Jupyter/IPython >=4.0
    from nbformat import reader
    from nbconvert import HTMLExporter

    from nbconvert.preprocessors.clearoutput import ClearOutputPreprocessor
    from nbconvert import NotebookExporter
    # IPython <= 3.0
    from IPython.nbformat import reader
    from IPython.nbconvert import HTMLExporter

    if version_info[0] == 3:
        # IPython 3
        from IPython.nbconvert.preprocessors.clearoutput import ClearOutputPreprocessor
        from IPython.nbconvert import NotebookExporter
        # IPython 2
        from IPython.nbformat import current
        NotebookExporter, ClearOutputPreprocessor = None, None

        def v3_strip_output(nb):
            """strip the outputs from a notebook object"""
            nb["nbformat"] = 3
            nb["nbformat_minor"] = 0
            nb.metadata.pop('signature', None)
            for cell in nb.worksheets[0].cells:
                if 'outputs' in cell:
                    cell['outputs'] = []
                if 'prompt_number' in cell:
                    cell['prompt_number'] = None
            return nb

import param
from import FileArchive, Pickler
from ..plotting.renderer import HTML_TAGS, MIME_TYPES

[docs]class NotebookArchive(FileArchive): """ FileArchive that can automatically capture notebook data via the display hooks and automatically adds a notebook HTML snapshot to the archive upon export. """ exporters = param.List(default=[Pickler]) skip_notebook_export = param.Boolean(default=False, doc=""" Whether to skip JavaScript capture of notebook data which may be unreliable. Also disabled automatic capture of notebook name.""") snapshot_name = param.String('index', doc=""" The basename of the exported notebook snapshot (html). It may optionally use the {timestamp} formatter.""") filename_formatter = param.String(default='{dimensions},{obj}', doc=""" Similar to FileArchive.filename_formatter except with support for the notebook name field as {notebook}.""") export_name = param.String(default='{notebook}', doc=""" Similar to FileArchive.filename_formatter except with support for the notebook name field as {notebook}.""") auto = param.Boolean(False) # Used for debugging to view Exceptions raised from Javascript traceback = None ffields = FileArchive.ffields.union({'notebook'}) efields = FileArchive.efields.union({'notebook'}) def __init__(self, **params): super(NotebookArchive, self).__init__(**params) self.nbversion = None self.notebook_name = None self.export_success = None self._auto = False self._replacements = {} self._notebook_data = None self._timestamp = None self._tags = {MIME_TYPES[k]:v for k,v in HTML_TAGS.items() if k in MIME_TYPES} keywords = ['%s=%s' % (k, v.__class__.__name__) for k,v in self.params().items()] = 'auto(enabled=Boolean, %s)' % ', '.join(keywords)
[docs] def get_namespace(self): """ Find the name the user is using to access holoviews. """ if 'holoviews' not in sys.modules: raise ImportError('HoloViews does not seem to be imported') matches = [k for k,v in get_ipython().user_ns.items() # noqa (get_ipython) if not k.startswith('_') and v is sys.modules['holoviews']] if len(matches) == 0: raise Exception("Could not find holoviews module in namespace") return '%s.archive' % matches[0]
[docs] def last_export_status(self): "Helper to show the status of the last call to the export method." if self.export_success is True: print("The last call to holoviews.archive.export was successful.") return elif self.export_success is None: print("Status of the last call to holoviews.archive.export is unknown." "\n(Re-execute this method once kernel status is idle.)") return print("The last call to holoviews.archive.export was unsuccessful.") if self.traceback is None: print("\n<No traceback captured>") else: print("\n"+self.traceback)
[docs] def auto(self, enabled=True, **kwargs): """ Method to enable or disable automatic capture, allowing you to simultaneously set the instance parameters. """ self.namespace = self.get_namespace() self.notebook_name = "{notebook}" self._timestamp = tuple(time.localtime()) kernel = r'var kernel = IPython.notebook.kernel; ' nbname = r"var nbname = IPython.notebook.get_notebook_name(); " nbcmd = (r"var name_cmd = '%s.notebook_name = \"' + nbname + '\"'; " % self.namespace) cmd = (kernel + nbname + nbcmd + "kernel.execute(name_cmd); ") display(Javascript(cmd)) time.sleep(0.5) self._auto=enabled self.set_param(**kwargs) tstamp = time.strftime(" [%Y-%m-%d %H:%M:%S]", self._timestamp) print("Automatic capture is now %s.%s" % ('enabled' if enabled else 'disabled', tstamp if enabled else ''))
[docs] def export(self, timestamp=None): """ Get the current notebook data and export. """ if self._timestamp is None: raise Exception("No timestamp set. Has the archive been initialized?") if self.skip_notebook_export: super(NotebookArchive, self).export(timestamp=self._timestamp, info={'notebook':self.notebook_name}) return self.export_success = None name = self.get_namespace() # Unfortunate javascript hacks to get at notebook data capture_cmd = ((r"var capture = '%s._notebook_data=r\"\"\"'" % name) + r"+json_string+'\"\"\"'; ") cmd = (r'var kernel = IPython.notebook.kernel; ' + r'var json_data = IPython.notebook.toJSON(); ' + r'var json_string = JSON.stringify(json_data); ' + capture_cmd + "var pycmd = capture + ';%s._export_with_html()'; " % name + r"kernel.execute(pycmd)") tstamp = time.strftime(self.timestamp_format, self._timestamp) export_name = self._format(self.export_name, {'timestamp':tstamp, 'notebook':self.notebook_name}) print(('Export name: %r\nDirectory %r' % (export_name, os.path.join(os.path.abspath(self.root)))) + '\n\nIf no output appears, please check holoviews.archive.last_export_status()') display(Javascript(cmd))
[docs] def add(self, obj=None, filename=None, data=None, info={}, html=None): "Similar to FileArchive.add but accepts html strings for substitution" initial_last_key = list(self._files.keys())[-1] if len(self) else None if self._auto: exporters = self.exporters[:] # Can only associate html for one exporter at a time for exporter in exporters: self.exporters = [exporter] super(NotebookArchive, self).add(obj, filename, data, info=dict(info, notebook=self.notebook_name)) # Only add substitution if file successfully added to archive. new_last_key = list(self._files.keys())[-1] if len(self) else None if new_last_key != initial_last_key: self._replacements[new_last_key] = html # Restore the full list of exporters self.exporters = exporters
# The following methods are executed via JavaScript and so fail # to appear in the coverage report even though they are tested. def _generate_html(self, node, substitutions): # pragma: no cover exporter = HTMLExporter() exporter.register_preprocessor(Substitute(self.nbversion, substitutions)) html,_ = exporter.from_notebook_node(node) return html def _clear_notebook(self, node): # pragma: no cover if NotebookExporter is not None: exporter = NotebookExporter() exporter.register_preprocessor(ClearOutputPreprocessor(enabled=True)) cleared,_ = exporter.from_notebook_node(node) else: stripped_node = v3_strip_output(node) cleared = current.writes(stripped_node, 'ipynb') return cleared def _export_with_html(self): # pragma: no cover "Computes substitutions before using nbconvert with preprocessors" self.export_success = False try: tstamp = time.strftime(self.timestamp_format, self._timestamp) substitutions = {} for (basename, ext), entry in self._files.items(): (_, info) = entry html_key = self._replacements.get((basename, ext), None) if html_key is None: continue filename = self._format(basename, {'timestamp':tstamp, 'notebook':self.notebook_name}) fpath = filename+(('.%s' % ext) if ext else '') info = {'src':fpath, 'mime_type':info['mime_type']} # No mime type if 'mime_type' not in info: pass # Not displayable in an HTML tag elif info['mime_type'] not in self._tags: pass else: basename, ext = os.path.splitext(fpath) truncated = self._truncate_name(basename, ext[1:]) link_html = self._format(self._tags[info['mime_type']], {'src':truncated, 'mime_type':info['mime_type'], 'css':''}) substitutions[html_key] = (link_html, truncated) node = self._get_notebook_node() html = self._generate_html(node, substitutions) export_filename = self.snapshot_name # Add the html snapshot super(NotebookArchive, self).add(filename=export_filename, data=html, info={'file-ext':'html', 'mime_type':'text/html', 'notebook':self.notebook_name}) # Add cleared notebook cleared = self._clear_notebook(node) super(NotebookArchive, self).add(filename=export_filename, data=cleared, info={'file-ext':'ipynb', 'mime_type':'text/json', 'notebook':self.notebook_name}) # If store cleared_notebook... save here super(NotebookArchive, self).export(timestamp=self._timestamp, info={'notebook':self.notebook_name}) except: self.traceback = traceback.format_exc() else: self.export_success = True def _get_notebook_node(self): # pragma: no cover "Load captured notebook node" size = len(self._notebook_data) if size == 0: raise Exception("Captured buffer size for notebook node is zero.") node = reader.reads(self._notebook_data) self.nbversion = reader.get_version(node) return node
notebook_archive = NotebookArchive()